FYI, CRIS is railways. IRCTC is independent: has its own staff, servers, software and many other things related to only railways. CRIS was never transferred to IRCTC, and never will be. If you can independently verify, CRIS has more (AND crucial) apps for the crew lobby of railways, not the traveling people. And none for IRCTC. Pls stop fake news.
BTW, if IRCTC makes loss, biggest stakeholder is railways. General public/investors form a minor part of the shareholding, It is extremely unlikely that IRCTC will ever make any loss since it now doesn't follow railways' employment policy, but will continue to work as a corporate entity.